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Creators/Authors contains: "Nussbaumer, Raphaël"

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  1. Every night during spring and autumn, the mass movement of migratory birds redistributes bird abundances found on the ground during the day. However, the connection between the magnitude of nocturnal migration and the resulting change in diurnal abundance remains poorly quantified. If departures and landings at the same location are balanced throughout the night, we expect high bird turnover but little change in diurnal abundance (stream‐like migration). Alternatively, migrants may move simultaneously in spatial pulses, with well‐separated areas of departure and landing that cause significant changes in the abundance of birds on the ground during the day (wave‐like migration). Here, we apply a flow model to data from weather surveillance radars (WSR) to quantify the daily fluxes of nocturnally migrating birds landing and departing from the ground, characterizing the movement and stopover of birds in a comprehensive synoptic scale framework. We corroborate our results with independent observations of the diurnal abundances of birds on the ground from eBird. Furthermore, we estimate the abundance turnover, defined as the proportion of birds replaced overnight. We find that seasonal bird migration chiefly resembles a stream where bird populations on the ground are continuously replaced by new individuals. Large areas show similar magnitudes of take‐off and landing, coupled with relatively small distances flown by birds each night, resulting in little change in bird densities on the ground. We further show that WSR‐inferred landing and take‐off fluxes predict changes in eBird‐derived abundance turnover rate and turnover in species composition. We find that the daily turnover rate of birds is 13% on average but can reach up to 50% on peak migration nights. Our results highlight that WSR networks can provide real‐time information on rapidly changing bird distributions on the ground. The flow model applied to WSR data can be a valuable tool for real‐time conservation and public engagement focused on migratory birds' daytime stopovers. 
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  2. Abstract Tracking technologies have widely expanded our understanding of bird migration routes, destinations and underlying strategies. However, determining the entire trajectory of small birds equipped with lightweight geolocators remains a challenge.We develop a highly optimized hidden Markov model (HMM) for reconstructing bird trajectories. The observation model is defined by pressure and, optionally, light measurements, while the movement model incorporates wind data to constrain consecutive positions based on realistic airspeeds. To reduce the computational costs associated with a large state space, we prune the HMM states and transitions based on flight and observation constraints to efficiently model the entire trajectory.The approach presented is based on a mathematically exact procedure and is fast to compute. We demonstrate how to compute (1) the most likely trajectory, (2) the marginal probability map of each stationary period, (3) simulated trajectories and (4) the wind conditions (wind support/drift) encountered by the bird during each migratory flight.We construct a version of an HMM optimized for reconstructing a bird's migration trajectory based on lightweight geolocator data. To render this approach easily accessible to researchers, we designed a dedicated R packageGeoPressureR(https://raphaelnussbaumer.com/GeoPressureR/). 
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